STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1528KEGG: slo:Shew_2521 decaheme cytochrome c MtrF. (646 aa)    
Predicted Functional Partners:
Ssed_1530
KEGG: she:Shewmr4_2506 cytochrome c family protein.
 
 
 0.900
Ssed_1529
KEGG: slo:Shew_2520 outer membrane protein, putative.
 
   
 0.891
Ssed_1523
KEGG: slo:Shew_2527 outer membrane protein precursor MtrB.
 
   
 0.863
Ssed_1524
KEGG: slo:Shew_2526 cytochrome c family protein.
 
 
 0.826
Ssed_0228
KEGG: sfr:Sfri_3685 outer membrane protein.
  
   
 0.786
Ssed_0351
KEGG: sfr:Sfri_3129 outer membrane protein.
  
   
 0.786
Ssed_1403
KEGG: sfr:Sfri_3685 outer membrane protein.
  
   
 0.786
Ssed_2150
KEGG: sfr:Sfri_3129 outer membrane protein.
  
   
 0.786
Ssed_2924
KEGG: sfr:Sfri_3129 outer membrane protein.
  
   
 0.786
Ssed_1306
KEGG: sfr:Sfri_3685 outer membrane protein.
  
   
 0.785
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.