STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1623KEGG: shn:Shewana3_1455 tetratricopeptide TPR_2 repeat protein. (644 aa)    
Predicted Functional Partners:
Ssed_1626
KEGG: slo:Shew_2428 protein of unknown function DUF58.
 
  
 0.973
Ssed_1622
KEGG: slo:Shew_2432 hypothetical protein.
 
 
 0.953
Ssed_1624
KEGG: shw:Sputw3181_1544 von Willebrand factor, type A.
     0.953
Ssed_1625
KEGG: slo:Shew_2429 hypothetical protein.
 
   
 0.950
Ssed_1627
KEGG: shw:Sputw3181_1547 ATPase associated with various cellular activities, AAA_3.
 
   
 0.934
htpG
Heat shock protein HSP90; Molecular chaperone. Has ATPase activity.
  
 0.769
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.754
Ssed_0110
KEGG: sdn:Sden_0205 glycosyl transferase, family 2.
  
 
 0.726
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.716
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.692
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.