STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1674Nickel-responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. (136 aa)    
Predicted Functional Partners:
Ssed_1677
KEGG: vfi:VF0679 oligopeptide transport system permease protein OppC.
  
  
 0.641
Ssed_1678
KEGG: vfi:VF0678 oligopeptide transport ATP-binding protein OppD.
     
 0.639
Ssed_1675
KEGG: vfi:VF0681 oligopeptide-binding protein OppA.
     
 0.633
Ssed_1676
KEGG: asa:ASA_1795 ABC-type dipeptide/oligopeptide/nickel transporter, permease component.
     
 0.631
Ssed_2093
KEGG: mgm:Mmc1_3140 cobalamin (vitamin B12) biosynthesis CbiM protein.
 
   
 0.605
Ssed_1679
KEGG: vfi:VF0677 putative dipeptide ABC transporter.
     
 0.569
Ssed_2096
KEGG: rpc:RPC_1962 ABC transporter related.
 
   
 0.563
Ssed_2095
ABC-type cobalt transport system permease component CbiQ and related transporter-like protein; KEGG: rpc:RPC_1961 cobalt ABC transporter CbiQ, permease subunit.
 
   
 0.504
Ssed_2094
KEGG: mag:amb4336 hypothetical protein.
 
     0.498
birA
Biotin--(acetyl-CoA-carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
     
 0.483
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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