STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1804KEGG: slo:Shew_1466 hypothetical protein. (489 aa)    
Predicted Functional Partners:
Ssed_3110
KEGG: slo:Shew_1314 hypothetical protein.
  
     0.637
Ssed_0672
KEGG: sdn:Sden_1130 putative NADH dehydrogenase with NAD(P)-binding domain.
  
   0.614
Ssed_2152
KEGG: cps:CPS_1768 hypothetical protein.
  
   0.614
Ssed_0803
Cytochrome c1; KEGG: slo:Shew_0572 cytochrome c1.
   
    0.612
Ssed_4424
KEGG: slo:Shew_0056 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
   0.584
Ssed_1067
KEGG: bra:BRADO5800 putative glutamate synthase (NADPH); putative 2-ketoglutarate: NADP oxidoreductase, gamma subunit (KorC-like).
  
   0.579
Ssed_1932
KEGG: cbo:CBO0432 pyridine nucleotide-disulphide oxidoreductase.
  
   0.579
Ssed_3343
KEGG: slo:Shew_2785 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
   0.576
Ssed_3958
KEGG: slo:Shew_3207 MauM/NapG family ferredoxin-type protein.
   
   0.576
Ssed_1803
KEGG: spc:Sputcn32_2293 hypothetical protein.
       0.542
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.