STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
deoDKEGG: vpa:VPA1475 purine nucleoside phosphorylase. (235 aa)    
Predicted Functional Partners:
Ssed_1995
Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
    
 0.910
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
    
 0.907
cobB
KEGG: slo:Shew_1662 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
    
 0.905
Ssed_2715
Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.
    
 0.904
add
KEGG: vvy:VVA1020 adenosine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.
    
 0.904
Ssed_3910
KEGG: slo:Shew_3142 hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
     
 0.904
deoD-2
KEGG: shw:Sputw3181_2368 purine nucleoside phosphorylase.
  
  
 
0.903
deoD-3
KEGG: slo:Shew_2812 purine nucleoside phosphorylase.
  
  
 
0.903
deoD-4
KEGG: vch:VCA0053 purine nucleoside phosphorylase.
  
  
 
0.903
Ssed_2694
KEGG: tde:TDE0870 phosphatase/nucleotidase; Belongs to the 5'-nucleotidase family.
    
 0.901
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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