STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1940KEGG: shn:Shewana3_0877 sugar-binding protein, putative. (334 aa)    
Predicted Functional Partners:
Ssed_0290
Histidine kinase; KEGG: saz:Sama_0067 signal transduction histidine kinase-like protein protein.
   
 
 0.827
Ssed_2941
KEGG: shn:Shewana3_2015 putative PAS/PAC sensor protein.
   
 
 0.827
Ssed_1285
Histidine kinase; KEGG: slo:Shew_1200 multi-sensor hybrid histidine kinase.
   
 
 0.826
Ssed_1381
KEGG: hch:HCH_00809 signal transduction histidine kinase.
   
 
 0.826
Ssed_0139
Histidine kinase; KEGG: neu:NE0049 sensory transduction histidine kinase.
   
 
 0.824
Ssed_3365
KEGG: sfr:Sfri_1992 multi-sensor hybrid histidine kinase.
 
 
 
 0.813
Ssed_0987
Histidine kinase; KEGG: slo:Shew_0907 PAS/PAC sensor hybrid histidine kinase.
   
 
 0.801
Ssed_1420
KEGG: sbl:Sbal_3006 extracellular solute-binding protein, family 1.
 
  
 0.777
Ssed_1864
KEGG: slo:Shew_1534 integral membrane sensor hybrid histidine kinase.
   
 
 0.755
Ssed_1753
KEGG: vfi:VFA0072 sensor protein LuxQ.
   
 
 0.748
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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