Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ssed_1968KEGG: shm:Shewmr7_1862 diguanylate phosphodiesterase. (231 aa)    
Predicted Functional Partners:
Ssed_1116
KEGG: vfi:VFA0056 hypothetical protein.
 
  
 0.874
Ssed_3217
KEGG: cps:CPS_3258 sensory box/GGDEF/GAF/EAL domain protein.
 
 
 0.856
Ssed_4146
KEGG: slo:Shew_0306 diguanylate cyclase/phosphodiesterase with GAF sensor.
 
  
 0.845
Ssed_1332
GGDEF domain; KEGG: sdn:Sden_1222 GGDEF domain.
 
  
 0.835
Ssed_1520
KEGG: saz:Sama_1202 GGDEF domain-like protein.
 
  
 0.833
Ssed_0046
KEGG: slo:Shew_3724 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
 0.832
Ssed_3344
Signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like protein; KEGG: aeh:Mlg_0074 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
 
 
 0.823
Ssed_3261
FOG: GGDEF domain-like protein; KEGG: mag:amb3617 hypothetical protein YddU.
 
 
 0.817
Ssed_0539
KEGG: slo:Shew_0384 diguanylate cyclase/phosphodiesterase.
  
  
 0.816
Ssed_2631
KEGG: slo:Shew_1596 diguanylate cyclase with PAS/PAC sensor.
 
 
 0.816
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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