STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1968KEGG: shm:Shewmr7_1862 diguanylate phosphodiesterase. (231 aa)    
Predicted Functional Partners:
Ssed_1116
KEGG: vfi:VFA0056 hypothetical protein.
 
  
 0.865
Ssed_3217
KEGG: cps:CPS_3258 sensory box/GGDEF/GAF/EAL domain protein.
 
 
 0.865
Ssed_4146
KEGG: slo:Shew_0306 diguanylate cyclase/phosphodiesterase with GAF sensor.
 
  
 0.855
Ssed_0046
KEGG: slo:Shew_3724 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
 0.835
Ssed_1332
GGDEF domain; KEGG: sdn:Sden_1222 GGDEF domain.
 
  
 0.829
Ssed_1520
KEGG: saz:Sama_1202 GGDEF domain-like protein.
 
  
 0.828
Ssed_3344
Signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like protein; KEGG: aeh:Mlg_0074 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
 
 
 0.822
Ssed_2254
KEGG: cps:CPS_1325 sensory box/GGDEF domain protein.
 
 
 0.816
Ssed_3261
FOG: GGDEF domain-like protein; KEGG: mag:amb3617 hypothetical protein YddU.
 
 
 0.816
Ssed_2631
KEGG: slo:Shew_1596 diguanylate cyclase with PAS/PAC sensor.
 
 
 0.815
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.