STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1973KEGG: pat:Patl_2252 histidine kinase. (422 aa)    
Predicted Functional Partners:
Ssed_1974
KEGG: sfr:Sfri_3676 two component transcriptional regulator, winged helix family protein.
 
   0.947
Ssed_1976
KEGG: sfr:Sfri_3678 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.876
Ssed_1977
KEGG: sfr:Sfri_3679 RND efflux system, outer membrane lipoprotein, NodT family protein.
 
   
 0.861
Ssed_1648
Histidine kinase; KEGG: vvy:VVA0933 signal transduction histidine kinase.
  
 
 0.806
Ssed_1285
Histidine kinase; KEGG: slo:Shew_1200 multi-sensor hybrid histidine kinase.
  
 
 0.787
Ssed_2941
KEGG: shn:Shewana3_2015 putative PAS/PAC sensor protein.
  
 
 0.787
Ssed_0290
Histidine kinase; KEGG: saz:Sama_0067 signal transduction histidine kinase-like protein protein.
  
 
 0.778
Ssed_0987
Histidine kinase; KEGG: slo:Shew_0907 PAS/PAC sensor hybrid histidine kinase.
  
 
 0.776
Ssed_1975
KEGG: pat:Patl_3597 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
   0.774
Ssed_1381
KEGG: hch:HCH_00809 signal transduction histidine kinase.
  
 
 0.767
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.