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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1975KEGG: pat:Patl_3597 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1062 aa)    
Predicted Functional Partners:
Ssed_1976
KEGG: sfr:Sfri_3678 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.962
Ssed_1977
KEGG: sfr:Sfri_3679 RND efflux system, outer membrane lipoprotein, NodT family protein.
 
 
 0.879
Ssed_0889
KEGG: slo:Shew_0766 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.811
Ssed_2167
KEGG: sfr:Sfri_1930 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.800
Ssed_1973
KEGG: pat:Patl_2252 histidine kinase.
   
   0.774
Ssed_1974
KEGG: sfr:Sfri_3676 two component transcriptional regulator, winged helix family protein.
       0.773
Ssed_0211
Membrane-fusion protein-like protein; KEGG: slo:Shew_3535 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.520
Ssed_2820
KEGG: slo:Shew_1649 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.520
Ssed_3992
KEGG: ilo:IL0466 RND efflux system membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.519
Ssed_3214
KEGG: vpa:VPA0364 putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.516
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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