Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ssed_1985KEGG: sbl:Sbal_1993 AsmA family protein. (611 aa)    
Predicted Functional Partners:
Ssed_1986
KEGG: sbl:Sbal_1994 intracellular proteinase inhibitor domain protein.
       0.784
Ssed_1984
Regulator of ribonuclease activity A; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
       0.747
Ssed_4136
KEGG: slo:Shew_0315 HemY domain protein.
 
     0.576
Ssed_2511
KEGG: slo:Shew_2173 protein of unknown function DUF490.
 
   
 0.554
Ssed_3527
KEGG: slo:Shew_2980 protein of unknown function DUF1458.
   
    0.528
Ssed_4142
KEGG: slo:Shew_0310 type I secretion outer membrane protein, TolC family.
  
  
 0.507
Ssed_3487
KEGG: shn:Shewana3_0993 lytic murein transglycosylase B.
  
    0.469
Ssed_1983
KEGG: slo:Shew_2119 methyl-accepting chemotaxis sensory transducer.
       0.439
Ssed_4140
KEGG: slo:Shew_0312 ABC transporter-related protein.
  
     0.433
Ssed_1979
KEGG: slo:Shew_2125 lytic transglycosylase, catalytic.
  
  
 0.428
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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