STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1990KEGG: slo:Shew_2113 hypothetical protein. (244 aa)    
Predicted Functional Partners:
Ssed_1144
KEGG: slo:Shew_1050 sigma E regulatory protein, MucB/RseB.
  
     0.717
zapD
Protein of unknown function DUF1342; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.693
Ssed_1434
KEGG: slo:Shew_1292 tetratricopeptide TPR_4.
  
     0.641
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
     
 0.612
Ssed_4128
KEGG: slo:Shew_0324 protein of unknown function DUF484.
  
     0.554
Ssed_1230
KEGG: slo:Shew_1135 protein of unknown function YGGT.
 
     0.547
Ssed_1169
KEGG: son:SO3422 ribosomal subunit interface protein.
  
     0.545
Ssed_1991
KEGG: shw:Sputw3181_2247 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.535
Ssed_1809
KEGG: slo:Shew_1471 protein of unknown function DUF1414; Belongs to the UPF0352 family.
  
     0.533
Ssed_3152
KEGG: slo:Shew_2626 outer membrane chaperone Skp (OmpH); Belongs to the skp family.
  
     0.530
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.