STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1997Peptidase M28; KEGG: pat:Patl_0405 peptidase M28. (537 aa)    
Predicted Functional Partners:
Ssed_4028
Peptidase M28; KEGG: slo:Shew_0532 peptidase M28.
  
     0.710
Ssed_0814
KEGG: slo:Shew_0774 peptidase S9B, dipeptidylpeptidase IV domain protein.
  
    0.643
Ssed_2036
KEGG: spc:Sputcn32_1940 TonB-dependent receptor.
  
     0.637
Ssed_2861
KEGG: sfr:Sfri_2416 TonB-dependent receptor.
  
     0.631
Ssed_3218
KEGG: pha:PSHAb0113 putative TonB-dependent receptor for Fe.
  
     0.603
Ssed_0089
KEGG: sbl:Sbal_0045 protein of unknown function DUF885.
  
     0.586
Ssed_1716
KEGG: slo:Shew_2385 TonB-dependent receptor, plug.
  
     0.582
Ssed_2248
KEGG: swi:Swit_4129 TonB-dependent receptor.
  
     0.571
Ssed_0807
KEGG: slo:Shew_0576 peptidase S9, prolyl oligopeptidase active site domain protein.
  
    0.559
Ssed_4207
KEGG: slo:Shew_0246 hypothetical protein.
  
     0.528
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.