Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ssed_2000KEGG: slo:Shew_2107 glutamine amidotransferase, class-II. (259 aa)    
Predicted Functional Partners:
Ssed_2001
Hypothetical protein.
       0.648
folE
KEGG: slo:Shew_3486 GTP cyclohydrolase I.
     
 0.607
Ssed_1811
KEGG: slo:Shew_1473 hypothetical protein.
     
 0.606
queC
ExsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
      
 0.605
Ssed_1999
KEGG: slo:Shew_2108 acyl-CoA dehydrogenase domain protein.
       0.485
Ssed_1497
KEGG: vfi:VFA0834 NirV precursor.
  
  
 0.449
Ssed_2035
KEGG: cef:CE1569 hypothetical protein.
  
  
 0.449
Ssed_3794
KEGG: lic:LIC10984 hypothetical protein.
  
  
 0.449
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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