STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_2002KEGG: slo:Shew_2106 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Ssed_1651
KEGG: slo:Shew_2307 hypothetical protein.
  
 
 
 0.816
Ssed_1611
KEGG: slo:Shew_2443 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
 
 0.708
Ssed_2293
KEGG: slo:Shew_1960 hypothetical protein.
  
     0.630
Ssed_2442
KEGG: slo:Shew_1837 hypothetical protein.
 
     0.625
Ssed_2127
KEGG: slo:Shew_2024 cell divisionFtsK/SpoIIIE.
    
 
 0.596
Ssed_3678
KEGG: slo:Shew_3067 YecA family protein; Belongs to the UPF0149 family.
  
    0.576
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.546
Ssed_3691
KEGG: slo:Shew_3075 hypothetical protein.
  
     0.533
Ssed_1086
KEGG: slo:Shew_1010 general secretion pathway protein B.
 
 
 0.524
Ssed_2470
KEGG: slo:Shew_1815 hypothetical protein.
  
     0.504
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.