STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_2005KEGG: slo:Shew_2104 major facilitator superfamily MFS_1. (573 aa)    
Predicted Functional Partners:
Ssed_4107
KEGG: cps:CPS_4791 putative oar protein.
  
     0.628
Ssed_3793
KEGG: slo:Shew_0675 hypothetical protein.
  
     0.577
Ssed_3647
KEGG: cps:CPS_0147 hydrolase, alpha/beta fold family.
  
     0.557
Ssed_2237
KEGG: sus:Acid_1539 MutT/NUDIX family protein.
  
    0.510
Ssed_3937
Conserved hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.485
Ssed_3599
KEGG: cps:CPS_2704 hypothetical protein.
  
     0.478
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.463
Ssed_0039
KEGG: slo:Shew_3732 microbial collagenase.
  
     0.444
Ssed_0761
KEGG: slo:Shew_3279 hypothetical protein.
  
     0.444
Ssed_3034
Alkaline phosphatase; KEGG: shn:Shewana3_1373 amino acid/peptide transporter.
  
  
0.440
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.