STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_2007KEGG: saz:Sama_1866 putative two-component system sensor kinase. (471 aa)    
Predicted Functional Partners:
Ssed_0279
KEGG: slo:Shew_3570 two component transcriptional regulator, winged helix family.
 
   0.823
Ssed_2316
KEGG: saz:Sama_1718 response regulator receiver protein.
 
   0.819
Ssed_3280
KEGG: cps:CPS_3065 DNA-binding response regulator.
 
   0.816
Ssed_1032
KEGG: hch:HCH_06917 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
   0.812
Ssed_1383
Response regulator containing a CheY-like protein receiver domain and a GGDEF domain-like protein; KEGG: dar:Daro_0012 response regulator receiver.
 
   0.810
Ssed_0712
KEGG: slo:Shew_3317 two component transcriptional regulator, winged helix family.
 
   0.806
Ssed_0981
KEGG: slo:Shew_0896 two component transcriptional regulator, winged helix family.
 
   0.805
Ssed_3367
KEGG: shn:Shewana3_1051 two component transcriptional regulator, winged helix family.
 
   0.805
Ssed_4408
KEGG: slo:Shew_0081 two component transcriptional regulator, winged helix family.
 
   0.805
Ssed_1974
KEGG: sfr:Sfri_3676 two component transcriptional regulator, winged helix family protein.
 
   0.793
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.