Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ssed_2056 | rplV | Ssed_2056 | Ssed_4312 | KEGG: she:Shewmr4_2052 Smr protein/MutS2. | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.619 |
| Ssed_2056 | rplW | Ssed_2056 | Ssed_4315 | KEGG: she:Shewmr4_2052 Smr protein/MutS2. | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.560 |
| Ssed_2056 | rpmB | Ssed_2056 | Ssed_0386 | KEGG: she:Shewmr4_2052 Smr protein/MutS2. | KEGG: slo:Shew_3480 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.563 |
| Ssed_2056 | rpmG | Ssed_2056 | Ssed_0387 | KEGG: she:Shewmr4_2052 Smr protein/MutS2. | KEGG: sfr:Sfri_3826 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.554 |
| Ssed_2056 | rpmH | Ssed_2056 | Ssed_0005 | KEGG: she:Shewmr4_2052 Smr protein/MutS2. | KEGG: shw:Sputw3181_4095 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.554 |
| Ssed_2056 | rpsG | Ssed_2056 | Ssed_4321 | KEGG: she:Shewmr4_2052 Smr protein/MutS2. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.574 |
| Ssed_2056 | rpsJ | Ssed_2056 | Ssed_4318 | KEGG: she:Shewmr4_2052 Smr protein/MutS2. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.573 |
| Ssed_2056 | rpsL | Ssed_2056 | Ssed_4322 | KEGG: she:Shewmr4_2052 Smr protein/MutS2. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.577 |
| Ssed_2056 | rpsN | Ssed_2056 | Ssed_4304 | KEGG: she:Shewmr4_2052 Smr protein/MutS2. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.563 |
| Ssed_2056 | rpsT | Ssed_2056 | Ssed_1191 | KEGG: she:Shewmr4_2052 Smr protein/MutS2. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.562 |
| rplV | Ssed_2056 | Ssed_4312 | Ssed_2056 | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | KEGG: she:Shewmr4_2052 Smr protein/MutS2. | 0.619 |
| rplV | rplW | Ssed_4312 | Ssed_4315 | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.998 |
| rplV | rpmB | Ssed_4312 | Ssed_0386 | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | KEGG: slo:Shew_3480 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.974 |
| rplV | rpmG | Ssed_4312 | Ssed_0387 | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | KEGG: sfr:Sfri_3826 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.976 |
| rplV | rpmH | Ssed_4312 | Ssed_0005 | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | KEGG: shw:Sputw3181_4095 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.879 |
| rplV | rpsG | Ssed_4312 | Ssed_4321 | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.988 |
| rplV | rpsJ | Ssed_4312 | Ssed_4318 | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.996 |
| rplV | rpsL | Ssed_4312 | Ssed_4322 | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.985 |
| rplV | rpsN | Ssed_4312 | Ssed_4304 | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.988 |
| rplV | rpsT | Ssed_4312 | Ssed_1191 | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.910 |
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