STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_2103Conserved hypothetical protein; KEGG: deb:DehaBAV1_0988 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (507 aa)    
Predicted Functional Partners:
Ssed_2102
Hypothetical protein; KEGG: ter:Tery_1492 glycosyl transferase, family 2.
 
     0.834
Ssed_2104
Hypothetical protein.
       0.788
Ssed_2105
KEGG: ppr:PBPRB1795 hypothetical protein.
 
   
 0.709
Ssed_0827
KEGG: she:Shewmr4_0805 hypothetical protein.
  
     0.522
Ssed_4106
KEGG: shw:Sputw3181_0509 hypothetical protein.
  
     0.513
Ssed_1437
KEGG: saz:Sama_0077 putative transcriptional regulator, MerR family.
 
     0.418
queF
GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.418
Ssed_2273
KEGG: ppr:PBPRA1988 putative pyruvate oxidoreductase.
 
   
 0.409
Ssed_3739
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.405
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.