STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_2135KEGG: slo:Shew_2015 DsrE family protein. (129 aa)    
Predicted Functional Partners:
Ssed_2134
KEGG: sbl:Sbal_2164 DsrE family protein; Belongs to the DsrF/TusC family.
 
 0.999
Ssed_2133
KEGG: sbl:Sbal_2163 DsrH family protein.
  
 0.997
Ssed_2132
DsrC family protein; Part of a sulfur-relay system.
 
 
 0.990
tusA
SirA family protein; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
 
 
 0.979
Ssed_2436
KEGG: slo:Shew_1842 SirA family protein; Belongs to the sulfur carrier protein TusA family.
  
 
 0.968
Ssed_2136
KEGG: sbl:Sbal_2166 protein of unknown function UPF0005; Belongs to the BI1 family.
       0.528
Ssed_2767
KEGG: sfr:Sfri_1507 glycosyl transferase, family 3.
 
    0.510
Ssed_1692
KEGG: slo:Shew_2409 short-chain dehydrogenase/reductase SDR.
  
     0.419
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.