Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Ssed_2136KEGG: sbl:Sbal_2166 protein of unknown function UPF0005; Belongs to the BI1 family. (219 aa)    
Predicted Functional Partners:
htpX
KEGG: slo:Shew_1723 HtpX domain protein; Belongs to the peptidase M48B family.
  
  
 0.722
msrA-2
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
   0.689
Ssed_0799
HflK protein; HflC and HflK could encode or regulate a protease.
  
   
 0.562
Ssed_2135
KEGG: slo:Shew_2015 DsrE family protein.
       0.555
Ssed_2132
DsrC family protein; Part of a sulfur-relay system.
     
 0.544
Ssed_2134
KEGG: sbl:Sbal_2164 DsrE family protein; Belongs to the DsrF/TusC family.
  
    0.540
Ssed_2611
KEGG: son:SO1867 hypothetical protein; Belongs to the UPF0502 family.
   
    0.495
ftsH
Microtubule-severing ATPase; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
  
 0.463
Ssed_0142
KEGG: slo:Shew_3660 glutathione-disulfide reductase.
  
   0.448
Ssed_0003
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
     
 0.439
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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