STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_2268KEGG: pin:Ping_2477 ADP-ribosylation/crystallin J1. (329 aa)    
Predicted Functional Partners:
Ssed_0933
KEGG: saz:Sama_0650 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.716
Ssed_1206
KEGG: saz:Sama_0935 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.716
Ssed_1314
KEGG: cdf:CD0865 hypothetical protein.
   
 0.674
Ssed_2270
KEGG: shn:Shewana3_1831 hypothetical protein.
     0.638
Ssed_2267
KEGG: spc:Sputcn32_2923 hypothetical protein.
       0.581
Ssed_1828
KEGG: slo:Shew_1499 putative nitrogen regulatory protein P-II.
   
 
 0.535
Ssed_2170
KEGG: ilo:IL1221 nitrogen regulatory protein PII.
   
 
 0.535
Ssed_0654
KEGG: tde:TDE0674 hypothetical protein.
   
 0.497
Ssed_2271
Hypothetical protein.
     
 0.468
Ssed_2266
DUF262; KEGG: rpa:RPA1904 DUF262.
       0.439
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.