Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ssed_2452KEGG: slo:Shew_1827 methylation site containing protein. (197 aa)    
Predicted Functional Partners:
Ssed_0542
KEGG: slo:Shew_0387 MSHA biogenesis protein MshJ.
 
   
 0.796
Ssed_0544
KEGG: slo:Shew_0389 pilus (MSHA type) biogenesis protein MshL.
 
  
 0.793
Ssed_0548
KEGG: shn:Shewana3_3659 type II secretion system protein.
 
    0.787
Ssed_0540
KEGG: sbl:Sbal_3839 conserved hypothetical biogenesis protein MshI.
 
  
 0.770
Ssed_0555
KEGG: slo:Shew_0400 methylation site containing protein.
 
     0.766
Ssed_0547
KEGG: shm:Shewmr7_0469 type II secretion system protein E.
 
 
 0.759
Ssed_0557
KEGG: slo:Shew_0402 MSHA biogenesis protein MshQ.
 
     0.724
Ssed_0554
KEGG: slo:Shew_0399 methylation site containing protein.
 
     0.706
Ssed_0541
KEGG: slo:Shew_0386 fimbrial assembly family protein.
 
  
 0.673
Ssed_4357
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.643
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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