STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_2575KEGG: ppr:PBPRB0338 hypothetical protein. (247 aa)    
Predicted Functional Partners:
Ssed_2576
KEGG: ppr:PBPRB0339 hypothetical protein.
 
     0.731
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.458
Ssed_2574
KEGG: pol:Bpro_3704 hypothetical protein.
       0.448
Ssed_3627
KEGG: vvu:VV2_0787 DNA gyrase inhibitor.
 
     0.444
Ssed_1401
AraC-type DNA-binding domain-containing protein-like protein; KEGG: vvy:VVA1171 hypothetical protein.
 
 
 0.438
Ssed_0632
KEGG: cps:CPS_3286 DNA-binding protein.
 
 
 0.434
Ssed_0701
KEGG: pmy:Pmen_4369 helix-turn-helix-domain containing protein, AraC type.
  
     0.416
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.