STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_2744KEGG: slo:Shew_1743 GCN5-related N-acetyltransferase. (175 aa)    
Predicted Functional Partners:
Ssed_1580
KEGG: sbl:Sbal_1649 GCN5-related N-acetyltransferase.
 
   
 0.767
Ssed_4413
KEGG: slo:Shew_0077 GCN5-related N-acetyltransferase.
 
   
 0.757
Ssed_3568
KEGG: slo:Shew_2997 acetyltransferase-like protein.
 
   
 0.574
Ssed_2745
KEGG: slo:Shew_1742 methyl-accepting chemotaxis protein.
       0.558
Ssed_2743
KEGG: slo:Shew_1744 GCN5-related N-acetyltransferase.
     
 0.544
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.510
Ssed_3314
KEGG: aha:AHA_0849 ribosomal-protein-alanine acetyltransferase.
 
   
 0.447
Ssed_2746
KEGG: slo:Shew_1741 beta-lactamase domain protein.
       0.417
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.