STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_2767KEGG: sfr:Sfri_1507 glycosyl transferase, family 3. (390 aa)    
Predicted Functional Partners:
trpC
KEGG: slo:Shew_2254 indole-3-glycerol-phosphate synthase., phosphoribosylanthranilate isomerase; Belongs to the TrpC family.
  
  
 0.983
Ssed_1686
KEGG: slo:Shew_2251 anthranilate synthase component I.
 
 
 0.963
Ssed_2359
KEGG: shw:Sputw3181_2219 para-aminobenzoate synthase, subunit I.
 
 
 0.962
trpA
Tryptophan synthase; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
 
  
 0.910
Ssed_1685
KEGG: slo:Shew_2252 glutamine amidotransferase of anthranilate synthase.
 
  
 0.895
Ssed_0806
KEGG: sdn:Sden_3196 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase.
 
  
 0.894
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
  
 0.880
trpB-2
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
  
 0.880
Ssed_2768
KEGG: sfr:Sfri_1506 uroporphyrin-III C-methyltransferase.
       0.799
Ssed_1175
Aspartate kinase., Homoserine dehydrogenase; KEGG: slo:Shew_1079 aspartate kinase; In the C-terminal section; belongs to the homoserine dehydrogenase family.
   
  
 0.662
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.