STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3003Pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis-like protein; KEGG: rsq:Rsph17025_3841 hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family. (378 aa)    
Predicted Functional Partners:
Ssed_3002
Hypothetical protein; KEGG: ter:Tery_1499 TPR repeat.
     
 0.713
Ssed_3097
KEGG: vvu:VV1_0811 predicted nucleoside-diphosphate sugar epimerase.
  
  
 0.688
Ssed_3001
Hypothetical protein; KEGG: ter:Tery_3136 capsular polysaccharide biosynthesis protein-like.
       0.686
Ssed_2951
KEGG: shn:Shewana3_2005 glycosyl transferase, WecB/TagA/CpsF family.
  
  
 0.674
Ssed_3608
KEGG: sfr:Sfri_2277 oxidoreductase domain protein.
  
  
 0.664
arnA
Bifunctional polymyxin resistance ArnA protein (polymyxin resistanceprotein PmrI); Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic aci [...]
  
  
 0.651
Ssed_3102
KEGG: vfi:VF0145 mannose-1-phosphate guanyltransferase.
  
 
 0.584
Ssed_0107
KEGG: abo:ABO_0910 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.577
Ssed_2990
KEGG: vfi:VF0166 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.577
Ssed_3000
KEGG: ctc:CTC01708 NDP-sugar dehydratase or epimerase.
  
  
 0.558
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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