STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3003Pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis-like protein; KEGG: rsq:Rsph17025_3841 hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family. (378 aa)    
Predicted Functional Partners:
Ssed_3097
KEGG: vvu:VV1_0811 predicted nucleoside-diphosphate sugar epimerase.
  
  
 0.758
Ssed_3002
Hypothetical protein; KEGG: ter:Tery_1499 TPR repeat.
       0.715
Ssed_2951
KEGG: shn:Shewana3_2005 glycosyl transferase, WecB/TagA/CpsF family.
  
  
 0.686
Ssed_3001
Hypothetical protein; KEGG: ter:Tery_3136 capsular polysaccharide biosynthesis protein-like.
       0.681
arnA
Bifunctional polymyxin resistance ArnA protein (polymyxin resistanceprotein PmrI); Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic aci [...]
  
  
 0.630
Ssed_3000
KEGG: ctc:CTC01708 NDP-sugar dehydratase or epimerase.
  
  
 0.566
Ssed_2973
KEGG: saz:Sama_2260 UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.554
Ssed_3102
KEGG: vfi:VF0145 mannose-1-phosphate guanyltransferase.
  
 
 0.498
Ssed_2955
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.468
Ssed_3013
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.468
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.