STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3167KEGG: slo:Shew_2641 PTS system, glucose-like IIB subunint. (489 aa)    
Predicted Functional Partners:
Ssed_2416
KEGG: slo:Shew_1864 PTS system, glucose subfamily, IIA subunit.
 0.999
Ssed_1211
KEGG: slo:Shew_1115 beta-N-acetylhexosaminidase.
 
  
 0.994
Ssed_2414
KEGG: shn:Shewana3_2256 phosphocarrier, HPr family.
 
 
 0.978
pgi
KEGG: shw:Sputw3181_3117 glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.952
Ssed_1026
KEGG: sbl:Sbal_3084 ROK family protein.
  
 
 0.950
Ssed_2937
KEGG: slo:Shew_1428 ROK family protein.
  
 
 0.950
Ssed_2332
KEGG: sbl:Sbal_4511 hypothetical protein.
    
 0.925
Ssed_2415
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
  
 0.908
Ssed_0874
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
   
 
 0.907
Ssed_2697
KEGG: slo:Shew_2165 aldose 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
     
  0.900
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.