STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3205KEGG: slo:Shew_2668 2-nitropropane dioxygenase, NPD. (541 aa)    
Predicted Functional Partners:
Ssed_3204
KEGG: ppr:PBPRA1458 omega-3 polyunsaturated fatty acid synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.997
Ssed_3202
KEGG: slo:Shew_2665 beta-ketoacyl synthase.
 
 0.976
Ssed_2625
KEGG: she:Shewmr4_2397 malonyl CoA-acyl carrier protein transacylase.
 
  
 0.964
Ssed_3203
KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB.
 
  
 0.957
Ssed_3186
KEGG: sfr:Sfri_1245 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
 
  
 0.875
Ssed_3967
KEGG: slo:Shew_3218 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.837
Ssed_1510
KEGG: slo:Shew_1713 3-oxoacyl-(acyl-carrier-protein (ACP)) synthase III C terminal domain protein.
 
  
 0.777
Ssed_0313
KEGG: shw:Sputw3181_0288 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
  
 0.678
Ssed_1512
KEGG: slo:Shew_1715 AMP-dependent synthetase and ligase.
 
  
 0.652
Ssed_1511
KEGG: sbl:Sbal_1551 alpha/beta hydrolase fold.
 
    0.629
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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