STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3206KEGG: sdn:Sden_2088 putative esterase. (421 aa)    
Predicted Functional Partners:
Ssed_0932
KEGG: shw:Sputw3181_0699 isochorismatase hydrolase.
  
    0.797
Ssed_4452
KEGG: slo:Shew_3769 hypothetical protein.
  
     0.761
Ssed_1417
KEGG: sbl:Sbal_3009 hypothetical protein.
  
     0.570
Ssed_1717
KEGG: sbl:Sbal_2665 C4-dicarboxylate transporter/malic acid transport protein.
   
    0.505
Ssed_1660
KEGG: cps:CPS_4002 hypothetical protein.
  
     0.466
Ssed_0018
Amidohydrolase; KEGG: slo:Shew_0013 amidohydrolase.
 
     0.436
Ssed_0178
KEGG: slo:Shew_0105 peptidase M14, carboxypeptidase A.
  
     0.436
menF
Isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate.
  
    0.432
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.