STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3208KEGG: vfi:VF1053 sensory transduction protein kinase. (451 aa)    
Predicted Functional Partners:
Ssed_3209
KEGG: ppr:PBPRA1218 putative chemotaxis protein CheY.
 
 
   0.940
Ssed_2941
KEGG: shn:Shewana3_2015 putative PAS/PAC sensor protein.
 
 
 0.757
Ssed_1648
Histidine kinase; KEGG: vvy:VVA0933 signal transduction histidine kinase.
  
 
 0.708
Ssed_0290
Histidine kinase; KEGG: saz:Sama_0067 signal transduction histidine kinase-like protein protein.
 
 
 0.699
Ssed_3207
KEGG: vfi:VF1052 transporter, divalent anion:sodium symporter family.
 
     0.680
Ssed_0139
Histidine kinase; KEGG: neu:NE0049 sensory transduction histidine kinase.
 
 
 0.658
Ssed_1381
KEGG: hch:HCH_00809 signal transduction histidine kinase.
 
 
 0.640
Ssed_1285
Histidine kinase; KEGG: slo:Shew_1200 multi-sensor hybrid histidine kinase.
 
 
 0.636
Ssed_0987
Histidine kinase; KEGG: slo:Shew_0907 PAS/PAC sensor hybrid histidine kinase.
 
 
 0.600
Ssed_2865
Signal transduction histidine kinase-like protein; KEGG: mgm:Mmc1_3164 multi-sensor hybrid histidine kinase.
 
 
 
 0.493
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.