STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3209KEGG: ppr:PBPRA1218 putative chemotaxis protein CheY. (157 aa)    
Predicted Functional Partners:
Ssed_0082
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
   
 
  0.943
Ssed_3058
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
   
 
  0.943
Ssed_3208
KEGG: vfi:VF1053 sensory transduction protein kinase.
 
 
   0.940
Ssed_0601
KEGG: shw:Sputw3181_0617 response regulator receiver protein.
  
 
  0.919
Ssed_3048
KEGG: slo:Shew_1384 response regulator receiver protein.
  
  0.909
Ssed_0187
KEGG: saz:Sama_3494 response regulator receiver protein.
   
  0.905
Ssed_0684
KEGG: gsu:GSU1286 chemotaxis protein CheY.
   
  0.905
Ssed_0186
KEGG: slo:Shew_0113 CheA signal transduction histidine kinase.
  
 
  0.902
Ssed_3046
KEGG: slo:Shew_1386 CheA signal transduction histidine kinase.
  
 
  0.902
Ssed_0765
KEGG: sbl:Sbal_3636 putative chemotaxis protein CheX.
     
  0.900
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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