STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3232FAD dependent oxidoreductase; Part of an electron transfer system. Belongs to the ETF-QO/FixC family. (430 aa)    
Predicted Functional Partners:
Ssed_3233
Putative ferredoxin; Could be a 3Fe-4S cluster-containing protein.
 
 
 0.988
Ssed_3230
KEGG: slo:Shew_2677 electron transfer flavoprotein beta-subunit.
 
 
 0.963
Ssed_3231
KEGG: slo:Shew_2678 electron transfer flavoprotein, alpha subunit.
 
 
 0.947
Ssed_1445
KEGG: slo:Shew_2584 electron transfer flavoprotein beta-subunit.
 
 
 0.817
Ssed_1446
KEGG: slo:Shew_2583 electron transfer flavoprotein, alpha subunit.
 
 
 0.789
Ssed_3227
KEGG: slo:Shew_2674 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
   
 0.747
Ssed_3234
KEGG: slo:Shew_2681 general substrate transporter.
 
  
 0.728
Ssed_3228
KEGG: slo:Shew_2675 acyl-CoA dehydrogenase domain protein.
 
  
 0.719
Ssed_4403
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
 
 
0.676
Ssed_3226
KEGG: slo:Shew_2673 AMP-dependent synthetase and ligase.
 
  
 0.570
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.