Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ssed_3333KEGG: sbl:Sbal_1342 multi antimicrobial extrusion protein MatE. (448 aa)    
Predicted Functional Partners:
Ssed_3334
KEGG: sbl:Sbal_1338 cobalamin synthesis protein, P47K.
       0.610
Ssed_2298
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.536
Ssed_3332
KEGG: slo:Shew_2774 TonB family protein.
       0.479
Ssed_0576
KEGG: slo:Shew_0419 glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
    0.470
Ssed_0875
Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); Catalyzes the NAD-dependent conversion of D-erythrose 4- phosphate to 4-phosphoerythronate.
   
    0.470
Ssed_2226
KEGG: slo:Shew_2000 glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
    0.470
Ssed_2228
KEGG: slo:Shew_2002 glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
    0.470
Ssed_0290
Histidine kinase; KEGG: saz:Sama_0067 signal transduction histidine kinase-like protein protein.
  
 
 0.434
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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