STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3530Hypothetical protein; KEGG: mxa:MXAN_0221 lipase. (368 aa)    
Predicted Functional Partners:
Ssed_3531
KEGG: sat:SYN_03116 hypothetical protein.
       0.574
Ssed_3529
KEGG: bce:BC3312 3-oxoadipate enol-lactonase.
  
  
 0.522
rpmA
KEGG: slo:Shew_0870 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.509
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.506
rpmB
KEGG: slo:Shew_3480 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
    
   0.502
rpmG
KEGG: sfr:Sfri_3826 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.502
rpsI
Ribosomal protein S9; KEGG: shw:Sputw3181_3430 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
   0.502
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.502
rpsP
KEGG: sdn:Sden_2754 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.502
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.502
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.