STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Ssed_3545KEGG: bba:Bd0322 D-amino acid dehydrogenase. (462 aa)    
Predicted Functional Partners:
Ssed_2687
KEGG: slo:Shew_2155 4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.911
Ssed_2225
KEGG: sfr:Sfri_2024 aspartate transaminase.
     
 0.902
Ssed_2301
KEGG: slo:Shew_1951 aspartate transaminase.
     
 0.902
hisC
KEGG: slo:Shew_2199 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.900
Ssed_1761
KEGG: slo:Shew_2363 proline racemase; Belongs to the proline racemase family.
 
   
 0.788
Ssed_1763
KEGG: slo:Shew_2361 proline racemase; Belongs to the proline racemase family.
 
   
 0.752
Ssed_1760
KEGG: slo:Shew_2364 aldehyde dehydrogenase.
 
  
 0.735
Ssed_1762
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
   
 0.735
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.722
thiG
Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
  
 0.711
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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