STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3545KEGG: bba:Bd0322 D-amino acid dehydrogenase. (462 aa)    
Predicted Functional Partners:
Ssed_2687
KEGG: slo:Shew_2155 4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.909
Ssed_2225
KEGG: sfr:Sfri_2024 aspartate transaminase.
     
 0.901
Ssed_2301
KEGG: slo:Shew_1951 aspartate transaminase.
     
 0.901
hisC
KEGG: slo:Shew_2199 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.901
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.894
Ssed_1761
KEGG: slo:Shew_2363 proline racemase; Belongs to the proline racemase family.
 
   
 0.781
Ssed_3727
KEGG: aha:AHA_1691 NADH dehydrogenase.
  
 
 0.748
Ssed_1763
KEGG: slo:Shew_2361 proline racemase; Belongs to the proline racemase family.
 
   
 0.743
Ssed_1762
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
   
 0.733
Ssed_1760
KEGG: slo:Shew_2364 aldehyde dehydrogenase.
 
  
 0.730
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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