STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3583KEGG: slo:Shew_3001 extracellular solute-binding protein, family 3; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (738 aa)    
Predicted Functional Partners:
Ssed_3762
KEGG: slo:Shew_3164 ABC transporter-related protein.
  
 
 0.649
Ssed_3599
KEGG: cps:CPS_2704 hypothetical protein.
 
  
 0.625
Ssed_1126
KEGG: slo:Shew_1032 glutamate synthase (ferredoxin).
     
 0.609
Ssed_1864
KEGG: slo:Shew_1534 integral membrane sensor hybrid histidine kinase.
  
 
 0.606
Ssed_3882
KEGG: slo:Shew_3115 sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
    0.598
Ssed_3139
KEGG: slo:Shew_2613 integral membrane sensor hybrid histidine kinase.
  
 
 0.595
Ssed_3761
KEGG: slo:Shew_3165 polar amino acid ABC transporter, inner membrane subunit.
  
 
 0.586
Ssed_2112
KEGG: slo:Shew_1821 2-methylcitrate synthase/citrate synthase II; Belongs to the citrate synthase family.
  
  
 0.560
Ssed_2819
KEGG: slo:Shew_1650 citrate synthase I; Belongs to the citrate synthase family.
  
  
 0.560
Ssed_3738
Na+/proline symporter-like protein; KEGG: sfu:Sfum_0294 multi-sensor signal transduction histidine kinase.
  
 
 0.549
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.