STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3592KEGG: vfi:VFA0032 thioredoxin peroxidase. (179 aa)    
Predicted Functional Partners:
Ssed_2577
KEGG: ppr:PBPRB1080 hypothetical protein.
  
     0.565
Ssed_2713
KEGG: ppr:PBPRA1446 putative lactoylglutathione lyase.
 
   
 0.558
Ssed_0678
KEGG: saz:Sama_0275 glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.544
Ssed_0677
KEGG: vpa:VPA0175 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.449
msrA-2
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.437
Ssed_3591
KEGG: slo:Shew_2961 hypothetical protein.
       0.427
Ssed_2578
KEGG: sfr:Sfri_0227 alcohol dehydrogenase, zinc-binding domain protein.
  
    0.413
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.