STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3602KEGG: gme:Gmet_2649 glyoxalase/bleomycin resistance protein/dioxygenase. (129 aa)    
Predicted Functional Partners:
birA
Biotin--(acetyl-CoA-carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.503
Ssed_2747
Nitroreductase; KEGG: slo:Shew_1740 nitroreductase.
 
    0.502
Ssed_4424
KEGG: slo:Shew_0056 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
  
 0.487
Ssed_1067
KEGG: bra:BRADO5800 putative glutamate synthase (NADPH); putative 2-ketoglutarate: NADP oxidoreductase, gamma subunit (KorC-like).
  
  
 0.473
Ssed_1932
KEGG: cbo:CBO0432 pyridine nucleotide-disulphide oxidoreductase.
  
  
 0.473
Ssed_3958
KEGG: slo:Shew_3207 MauM/NapG family ferredoxin-type protein.
  
  
 0.466
Ssed_3343
KEGG: slo:Shew_2785 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
  
 0.459
Ssed_2818
KEGG: slo:Shew_1651 succinate dehydrogenase, cytochrome b subunit.
   
    0.444
Ssed_4115
KEGG: slo:Shew_0333 fumarate reductase respiratory complex, transmembrane subunit.
   
    0.444
Ssed_4116
KEGG: slo:Shew_0332 fumarate reductase respiratory complex, transmembrane subunit.
   
    0.444
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.