STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3929KEGG: slo:Shew_3173 succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (489 aa)    
Predicted Functional Partners:
Ssed_3928
(S)-3-amino-2-methylpropionate transaminase; KEGG: slo:Shew_3172 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.966
Ssed_0298
KEGG: eca:ECA0910 putative flavoprotein subunit of a reductase.
   
 0.918
Ssed_2731
KEGG: eca:ECA0910 putative flavoprotein subunit of a reductase.
   
 0.918
Ssed_2816
KEGG: son:SO1928 succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 0.918
Ssed_3877
Succinate dehydrogenase; KEGG: slo:Shew_3112 flavocytochrome c; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 0.918
Ssed_4114
KEGG: slo:Shew_0334 succinate dehydrogenase or fumarate reductase, flavoprotein subunit.
   
 0.918
Ssed_2815
KEGG: slo:Shew_1654 succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.910
Ssed_4113
KEGG: slo:Shew_0335 succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.910
Ssed_2819
KEGG: slo:Shew_1650 citrate synthase I; Belongs to the citrate synthase family.
  
 0.909
Ssed_2817
Conserved hypothetical succinate dehydrogenase, hydrophobic subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
   
 
 0.905
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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