Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Ssed_0820 | Ssed_1126 | KEGG: sbl:Sbal_0732 putative transcriptional regulator, AsnC family. | KEGG: slo:Shew_1032 glutamate synthase (ferredoxin). | 0.426 |
Ssed_0820 | Ssed_3846 | KEGG: sbl:Sbal_0732 putative transcriptional regulator, AsnC family. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.422 |
Ssed_0820 | Ssed_4155 | KEGG: sbl:Sbal_0732 putative transcriptional regulator, AsnC family. | KEGG: slo:Shew_0301 transcriptional regulator, AsnC family. | 0.759 |
Ssed_1126 | Ssed_0820 | KEGG: slo:Shew_1032 glutamate synthase (ferredoxin). | KEGG: sbl:Sbal_0732 putative transcriptional regulator, AsnC family. | 0.426 |
Ssed_1126 | Ssed_3846 | KEGG: slo:Shew_1032 glutamate synthase (ferredoxin). | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.941 |
Ssed_1126 | Ssed_4155 | KEGG: slo:Shew_1032 glutamate synthase (ferredoxin). | KEGG: slo:Shew_0301 transcriptional regulator, AsnC family. | 0.426 |
Ssed_3846 | Ssed_0820 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | KEGG: sbl:Sbal_0732 putative transcriptional regulator, AsnC family. | 0.422 |
Ssed_3846 | Ssed_1126 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | KEGG: slo:Shew_1032 glutamate synthase (ferredoxin). | 0.941 |
Ssed_3846 | Ssed_4155 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | KEGG: slo:Shew_0301 transcriptional regulator, AsnC family. | 0.422 |
Ssed_4154 | Ssed_4155 | KEGG: shm:Shewmr7_3657 phosphoesterase, PA-phosphatase related. | KEGG: slo:Shew_0301 transcriptional regulator, AsnC family. | 0.523 |
Ssed_4155 | Ssed_0820 | KEGG: slo:Shew_0301 transcriptional regulator, AsnC family. | KEGG: sbl:Sbal_0732 putative transcriptional regulator, AsnC family. | 0.759 |
Ssed_4155 | Ssed_1126 | KEGG: slo:Shew_0301 transcriptional regulator, AsnC family. | KEGG: slo:Shew_1032 glutamate synthase (ferredoxin). | 0.426 |
Ssed_4155 | Ssed_3846 | KEGG: slo:Shew_0301 transcriptional regulator, AsnC family. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.422 |
Ssed_4155 | Ssed_4154 | KEGG: slo:Shew_0301 transcriptional regulator, AsnC family. | KEGG: shm:Shewmr7_3657 phosphoesterase, PA-phosphatase related. | 0.523 |