Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_4232Carbonate dehydratase; KEGG: sfr:Sfri_3440 transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family. (289 aa)    
Predicted Functional Partners:
Ssed_2686
KEGG: slo:Shew_2153 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.673
Ssed_0161
KEGG: ppr:PBPRB1939 hypothetical transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.655
Ssed_1776
KEGG: sit:TM1040_3283 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.644
Ssed_2258
KEGG: vfi:VF1063 transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.632
Ssed_0901
KEGG: shn:Shewana3_0884 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.628
Ssed_1242
KEGG: slo:Shew_1149 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.626
Ssed_1991
KEGG: shw:Sputw3181_2247 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.607
Ssed_0276
KEGG: sfr:Sfri_3892 transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.586
Ssed_0677
KEGG: vpa:VPA0175 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.532
Ssed_2839
KEGG: slo:Shew_1624 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.525
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.