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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_4366KEGG: mgm:Mmc1_0550 hypothetical protein. (488 aa)    
Predicted Functional Partners:
Ssed_1914
Periplasmic nitrate reductase, cytochrome c-type protein; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
  
 
 0.948
Ssed_3960
KEGG: slo:Shew_3209 nitrate reductase cytochrome c-type subunit (NapB).
  
 
 0.948
Ssed_0688
KEGG: slo:Shew_0505 nitrite reductase (cytochrome; ammonia-forming); Belongs to the cytochrome c-552 family.
  
  0.931
nrfA
Nitrite reductase (cytochrome; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
  
  0.931
napA
Anaerobic dehydrogenase, typically selenocysteine-containing; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
 0.931
Ssed_3653
Nitrite reductase (cytochrome; KEGG: shn:Shewana3_0658 cytochrome c552; Belongs to the cytochrome c-552 family.
  
  0.931
Ssed_3744
KEGG: slo:Shew_0844 nitrite reductase (cytochrome; ammonia-forming); Belongs to the cytochrome c-552 family.
  
  0.931
napA-2
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
 0.931
Ssed_3758
KEGG: gme:Gmet_0142 hypothetical protein.
  
  
 
0.927
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
    
 0.904
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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