STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_4415KEGG: son:SO4515 formate dehydrogenase, C subunit, putative. (328 aa)    
Predicted Functional Partners:
Ssed_4417
KEGG: slo:Shew_0063 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.997
Ssed_4416
KEGG: slo:Shew_0064 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
 0.994
Ssed_4421
KEGG: slo:Shew_0059 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.994
Ssed_4420
KEGG: slo:Shew_0060 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
 0.990
Ssed_0838
KEGG: slo:Shew_0809 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.967
Ssed_2570
Hypothetical protein; KEGG: reh:H16_B1454 formate dehydrogenase gamma subunit.
  
  
  0.912
Ssed_4214
KEGG: slo:Shew_0239 formate dehydrogenase, gamma subunit.
  
  
 
0.906
Ssed_4419
KEGG: slo:Shew_0061 formate dehydrogenase, gamma subunit.
  
  
 
0.904
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
     
  0.900
Ssed_4226
Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde.
     
  0.900
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.