STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_4476KEGG: slo:Shew_3812 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (479 aa)    
Predicted Functional Partners:
Ssed_2212
KEGG: shn:Shewana3_2108 cytochrome c oxidase, cbb3-type, subunit II.
 
  
 0.975
Ssed_2214
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.975
Ssed_2211
KEGG: slo:Shew_1985 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.974
Ssed_2218
KEGG: slo:Shew_1992 hypothetical protein.
 
     0.792
Ssed_2217
KEGG: slo:Shew_1991 cytochrome oxidase maturation protein, cbb3-type.
 
  
 0.770
Ssed_2216
KEGG: slo:Shew_1990 heavy metal translocating P-type ATPase.
 
  
 0.755
Ssed_2213
KEGG: slo:Shew_1987 Cbb3-type cytochrome oxidase component.
 
  
 0.752
Ssed_2215
KEGG: slo:Shew_1989 hypothetical protein.
 
  
 0.747
Ssed_0090
KEGG: shw:Sputw3181_0039 oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.731
Ssed_3958
KEGG: slo:Shew_3207 MauM/NapG family ferredoxin-type protein.
  
 
 0.605
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.