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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mvb12aUncharacterized protein. (275 aa)    
Predicted Functional Partners:
vps28
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.995
vps37b
VPS37B subunit of ESCRT-I.
   
 0.994
LOC108425227
Zgc:114173.
   
 0.983
LOC108442460
Zgc:123278.
    
 0.962
LOC108442650
Tumor susceptibility 101b.
    
 0.962
tsg101
Tumor susceptibility 101a.
    
 0.962
LOC108426122
VPS37C subunit of ESCRT-I.
   
 0.958
vps37a
VPS37A subunit of ESCRT-I.
   
 0.957
LOC108428528
Si:ch211-284f22.3.
   
 0.926
uevld
UEV and lactate/malate dehyrogenase domains.
    
 0.919
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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