STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfyaNuclear transcription factor Y, alpha, like. (315 aa)    
Predicted Functional Partners:
nfyb
Nuclear transcription factor Y, beta a.
   
 0.999
nfyc
Nuclear transcription factor Y, gamma.
    
 0.999
chrac1
Chromatin accessibility complex subunit 1.
    
 0.990
tbpl1
TBP-like 1.
    
 0.921
ciita
Class II, major histocompatibility complex, transactivator.
     
 0.914
tbpl2
TATA box binding protein like 2.
    
 0.891
tbp
TATA box binding protein.
    
 0.891
sp1
Sp1 transcription factor.
    
 0.740
ZHX1
Zinc fingers and homeoboxes 1.
    
 
 0.722
ep300
E1A binding protein p300 b.
    
 0.687
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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