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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108432575C1q domain-containing protein. (694 aa)    
Predicted Functional Partners:
LOC108412904
Uncharacterized protein.
    
  0.617
col8a2
Collagen, type VIII, alpha 2.
  
  
 
0.575
ENSPNAP00000005592
Uncharacterized protein.
 
 
  0.545
col6a2
Collagen, type VI, alpha 2.
  
0.529
LOC108432509
Uncharacterized protein.
    
  0.519
LOC108414528
Uncharacterized protein.
    
  0.519
ENSPNAP00000026989
Uncharacterized protein.
  
     0.498
ENSPNAP00000037204
Collagen IV NC1 domain-containing protein.
 
     
0.458
LOC108442522
Ig-like domain-containing protein.
    
   0.416
col6a1
Collagen, type VI, alpha 1.
  
0.414
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.