Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108432575C1q domain-containing protein. (694 aa)    
Predicted Functional Partners:
col6a1
Collagen, type VI, alpha 1.
  
0.667
col8a2
Collagen, type VIII, alpha 2.
     
  0.629
col6a2
Collagen, type VI, alpha 2.
  
0.614
LOC108412904
Uncharacterized protein.
    
  0.577
ENSPNAP00000005592
Uncharacterized protein.
  
     0.528
COPS6
COP9 signalosome subunit 6.
    
 0.508
ENSPNAP00000026989
Uncharacterized protein.
  
     0.498
lrig3
Leucine-rich repeats and immunoglobulin-like domains 3.
    
 
 0.496
LOC108414649
Integrin, beta 4.
    
 0.469
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.458
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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