Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108428686TUB like protein 4b; Belongs to the TUB family. (1880 aa)    
Predicted Functional Partners:
cul5
Cullin 5a; Belongs to the cullin family.
    
  0.911
rnf7
Ring finger protein 7.
    
  0.860
ELOB
Elongin B.
    
  0.736
LOC108427344
Elongin B.
    
  0.736
kcne4
Potassium voltage-gated channel, Isk-related family, member 4.
      
 0.723
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
  0.723
serac1
Serine active site containing 1.
      
 0.712
tmem242
Transmembrane protein 242.
      
 0.709
gtf2h5
General transcription factor IIH, polypeptide 5.
      
 0.689
ENSPNAP00000013502
FATP synthase c subunit lysine N-methyltransferase.
      
 0.681
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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