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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108425272JAZF zinc finger 1a. (233 aa)    
Predicted Functional Partners:
ENSPNAP00000029884
WD repeat domain 82.
    
 0.917
sympk
Symplekin.
    
 
 0.865
trrap
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.813
tmem240
Transmembrane protein 240b.
    
 0.736
LOC108415401
SSU72 homolog, RNA polymerase II CTD phosphatase.
    
 0.736
LOC108433958
Transmembrane protein 240a.
    
 0.736
meaf6
MYST/Esa1-associated factor 6.
    
 
 0.725
nr2c2
Nuclear receptor subfamily 2, group C, member 2.
    
 
 0.696
nr2c1
Nuclear receptor subfamily 2, group C, member 1.
    
 
 0.696
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
    
 
 0.673
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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