Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdk13Cyclin-dependent kinase 13. (1424 aa)    
Predicted Functional Partners:
CCNK
Cyclin K; Belongs to the cyclin family.
   
 0.987
supt5h
Transcription elongation factor SPT5.
    
 0.971
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
    
 0.957
cdk7
Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.
    
0.930
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.913
ENSPNAP00000011272
annotation not available
   
 0.913
ccnh
Cyclin H; Belongs to the cyclin family.
    
 0.907
ccnt2
Cyclin T2b; Belongs to the cyclin family.
    
 0.906
ccnt1
Cyclin T1; Belongs to the cyclin family.
    
 0.906
LOC108425957
Cyclin T2a; Belongs to the cyclin family.
    
 0.906
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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